Oxford Nanopore's Basecaller

Structural variation caller using third generation sequencing

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

Sequence correction provided by ONT Research

A PyTorch Basecaller for Oxford Nanopore Reads

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

Long read / genome alignment software

A curated list of awesome nanopore analysis tools.

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

Assembly and binning of metagenomes

PEPPER-Margin-DeepVariant

A bioinformatics tool for working with modified bases

Reference-guided transcript discovery and quantification for long read RNA-Seq data

A collection of scripts and notes related to genomics and bioinformatics

Nanopore demultiplexing, QC and alignment pipeline

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

Methylation/modified base calling separated from basecalling.

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Pod5: a high performance file format for nanopore reads.